Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: RPAP3 ENSBTAG00000018690

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Description

RNA polymerase II associated protein 3 [Source:VGNC Symbol;Acc:VGNC:34100]

Location

Primary_assembly 5: 32,589,529-32,648,548 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 4 transcripts (splice variants), 212 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000093178.2	RPAP3-201	3566	702aa	ENSBTAP00000083400.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SL80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000024878.8	RPAP3-203	3298	665aa	ENSBTAP00000024878.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N0V7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000054570.5	RPAP3-204	3196	631aa	ENSBTAP00000048352.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MFU5	-
ENSBTAT00000088523.1	RPAP3-202	2096	644aa	ENSBTAP00000087468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9STZ0	-

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Summary

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