Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Gene: SPINDOC ENSBTAG00000018022

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Description

spindlin interactor and repressor of chromatin binding [Source:VGNC Symbol;Acc:VGNC:50753]

Location

Primary_assembly 29: 42,166,731-42,178,294 forward strand.

ARS-UCD2.0:CM008196.2

About this gene

This gene has 3 transcripts (splice variants) and 92 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000113211.2	SPINDOC-201	1606	386aa	ENSBTAP00000098842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TQY3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000150140.1	SPINDOC-203	5218	373aa	ENSBTAP00000104934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000023992.7	SPINDOC-202	1946	384aa	ENSBTAP00000023992.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BD11	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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