Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: NUP50 ENSBTAG00000017652

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Description

nucleoporin 50 [Source:VGNC Symbol;Acc:VGNC:32362]

Location

Primary_assembly 5: 115,588,227-115,610,172 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 2 transcripts (splice variants) and 226 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000095963.2	NUP50-201	2084	572aa	ENSBTAP00000100590.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TU20	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000023480.6	NUP50-202	4871	465aa	ENSBTAP00000023480.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MZD9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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