Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CCSER2 ENSBTAG00000017611

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Description

coiled-coil serine rich protein 2 [Source:VGNC Symbol;Acc:VGNC:26994]

Location

Primary_assembly 28: 39,271,744-39,430,377 forward strand.

ARS-UCD2.0:CM008195.2

About this gene

This gene has 5 transcripts (splice variants), 246 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000073393.3	CCSER2-202	7320	1047aa	ENSBTAP00000065544.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LXN1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000066789.3	CCSER2-203	7236	1019aa	ENSBTAP00000060299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MX85	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000068296.3	CCSER2-205	4697	834aa	ENSBTAP00000065682.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LY39	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000075535.3	CCSER2-204	2706	808aa	ENSBTAP00000069591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NDM0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000023416.7	CCSER2-201	2617	779aa	ENSBTAP00000023416.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BF73	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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