Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC8A1 ENSBTAG00000013861

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Description

solute carrier family 8 member A1 [Source:VGNC Symbol;Acc:VGNC:34935]

Location

Primary_assembly 11: 22,407,417-22,855,023 reverse strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 4 transcripts (splice variants), 285 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000022795.6	SLC8A1-204	5957	962aa	ENSBTAP00000022795.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MC36	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000111208.1	SLC8A1-201	5966	941aa	ENSBTAP00000094050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TB21	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000099552.1	SLC8A1-202	5949	934aa	ENSBTAP00000084998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E655	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000018452.6	SLC8A1-203	5937	958aa	ENSBTAP00000018452.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6R8D6	-

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Summary

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