Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: CENPJ ENSBTAG00000017048

.

Description

centromere protein J [Source:VGNC Symbol;Acc:VGNC:50039]

Location

Primary_assembly 12: 36,486,712-36,521,245 forward strand.

ARS-UCD2.0:CM008179.2

About this gene

This gene has 3 transcripts (splice variants) and 168 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000022667.6	CENPJ-201	4211	1354aa	ENSBTAP00000022667.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BL95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000085726.3	CENPJ-202	4070	1307aa	ENSBTAP00000061596.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0R8	-
ENSBTAT00000085273.3	CENPJ-203	3953	1268aa	ENSBTAP00000072819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MF57	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.