Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
Regulation
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ID History
- Gene history

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Gene: USO1 ENSBTAG00000017028

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Description

USO1 vesicle transport factor [Source:VGNC Symbol;Acc:VGNC:36708]

Location

Primary_assembly 6: 90,560,663-90,641,878 forward strand.

ARS-UCD2.0:CM008173.2

About this gene

This gene has 5 transcripts (splice variants) and 206 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000104724.2	USO1-205	4026	972aa	ENSBTAP00000084016.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SD15	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000097040.2	USO1-201	4031	968aa	ENSBTAP00000075453.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S066	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000022642.6	USO1-203	4013	961aa	ENSBTAP00000022642.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P41541	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000122676.2	USO1-202	3929	934aa	ENSBTAP00000100863.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TUQ7	-
ENSBTAT00000106786.2	USO1-204	3911	927aa	ENSBTAP00000076690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S030	-

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Summary

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