Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LYST ENSBTAG00000016804

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Description

lysosomal trafficking regulator [Source:VGNC Symbol;Acc:VGNC:31115]

Location

Primary_assembly 28: 8,379,173-8,548,559 reverse strand.

ARS-UCD2.0:CM008195.2

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues, 6 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000022355.7	LYST-202	12283	3850aa	ENSBTAP00000022355.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MLZ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000116129.1	LYST-203	12410	3826aa	ENSBTAP00000084896.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SLS8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000100283.1	LYST-201	12016	3753aa	ENSBTAP00000102613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TYN1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000081647.2	LYST-204	11431	3764aa	ENSBTAP00000066761.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MD56	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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