Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SEMA6D ENSBTAG00000016800

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Description

semaphorin 6D [Source:VGNC Symbol;Acc:VGNC:34444]

Location

Primary_assembly 10: 62,638,620-62,696,011 reverse strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 5 transcripts (splice variants), 206 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000022349.6	SEMA6D-201	6005	1073aa	ENSBTAP00000022349.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BNY3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000085838.2	SEMA6D-202	5948	1054aa	ENSBTAP00000065582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M5K3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000078627.2	SEMA6D-203	5885	1033aa	ENSBTAP00000073130.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MMS5	-
ENSBTAT00000076742.2	SEMA6D-204	4404	1017aa	ENSBTAP00000070146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MLI3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000083251.2	SEMA6D-205	4386	1011aa	ENSBTAP00000072290.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MDS6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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