Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
- Gene history

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Gene: CCDC142 ENSBTAG00000016600

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Description

coiled-coil domain containing 142 [Source:VGNC Symbol;Acc:VGNC:26853]

Location

Primary_assembly 11: 10,151,296-10,159,251 forward strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 3 transcripts (splice variants) and 166 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000109135.2	CCDC142-201	3658	760aa	ENSBTAP00000095809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TFM8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000022083.6	CCDC142-202	3043	749aa	ENSBTAP00000022083.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B709	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000131962.2	CCDC142-203	2978	731aa	ENSBTAP00000081068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SAY9	-

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Summary

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