Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PRPF40B ENSBTAG00000016589

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Description

pre-mRNA processing factor 40 homolog B [Source:VGNC Symbol;Acc:VGNC:33380]

Location

Primary_assembly 5: 30,202,308-30,240,842 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 3 transcripts (splice variants), 114 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000022067.7	PRPF40B-203	3365	956aa	ENSBTAP00000022067.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1B703	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000077702.2	PRPF40B-201	4029	942aa	ENSBTAP00000068795.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M587	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000074031.2	PRPF40B-202	4027	899aa	ENSBTAP00000072844.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NKH6	-

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Summary

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