Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: HAL ENSBTAG00000016276

.

Description

histidine ammonia-lyase [Source:VGNC Symbol;Acc:VGNC:29744]

Location

Primary_assembly 5: 60,266,645-60,300,354 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 5 transcripts (splice variants) and 202 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000078281.2	HAL-204	3775	674aa	ENSBTAP00000063740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LTF3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000068170.2	HAL-203	3601	625aa	ENSBTAP00000065003.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M559	-
ENSBTAT00000021649.6	HAL-202	3477	648aa	ENSBTAP00000021649.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6Z2C7	-
ENSBTAT00000094656.2	HAL-201	2347	616aa	ENSBTAP00000102101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TY32	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000085338.2	HAL-205	1782	591aa	ENSBTAP00000071205.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MAY2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.