Summary
- Splice variants
- Transcript comparison
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Gene: CARF ENSBTAG00000016000

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Description

calcium responsive transcription factor [Source:VGNC Symbol;Acc:VGNC:26765]

Location

Primary_assembly 2: 91,230,579-91,310,808 forward strand.

ARS-UCD2.0:CM008169.2

About this gene

This gene has 3 transcripts (splice variants) and 157 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000121733.2	CARF-201	2708	730aa	ENSBTAP00000098256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TMP8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000021288.6	CARF-202	3011	703aa	ENSBTAP00000021288.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N5Z9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000095413.2	CARF-203	2007	648aa	ENSBTAP00000103918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U1F5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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