Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TNN ENSBTAG00000015650

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Description

tenascin N [Source:VGNC Symbol;Acc:VGNC:36188]

Location

Primary_assembly 16: 56,313,798-56,386,529 forward strand.

ARS-UCD2.0:CM008183.2

About this gene

This gene has 6 transcripts (splice variants), 125 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000104676.2	TNN-201	4729	1296aa	ENSBTAP00000098356.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TIS1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000127154.2	TNN-202	4729	1296aa	ENSBTAP00000089463.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SVW5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000020785.8	TNN-203	4729	1296aa	ENSBTAP00000020785.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BB79	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000101432.2	TNN-204	4729	1296aa	ENSBTAP00000094289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TIS1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000126457.2	TNN-205	4465	1208aa	ENSBTAP00000077760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RYR2	-
ENSBTAT00000096253.2	TNN-206	4201	1120aa	ENSBTAP00000099809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TMR8	-

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Summary

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