Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPRR ENSBTAG00000015311

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Description

protein tyrosine phosphatase receptor type R [Source:VGNC Symbol;Acc:VGNC:33557]

Location

Primary_assembly 5: 42,611,602-42,884,726 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 6 transcripts (splice variants), 194 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000020359.8	PTPRR-201	3362	655aa	ENSBTAP00000020359.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PKF8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000103522.2	PTPRR-202	3251	618aa	ENSBTAP00000084089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SFE7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000117778.1	PTPRR-204	3212	639aa	ENSBTAP00000087821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SV27	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000106455.2	PTPRR-203	3206	603aa	ENSBTAP00000086821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SS70	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000101385.1	PTPRR-205	2719	543aa	ENSBTAP00000091668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SYY1	-
ENSBTAT00000099142.1	PTPRR-206	2549	449aa	ENSBTAP00000099856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TMW5	-

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Summary

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