Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPRB ENSBTAG00000015296

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Description

protein tyrosine phosphatase receptor type B [Source:VGNC Symbol;Acc:VGNC:33545]

Location

Primary_assembly 5: 42,885,377-43,011,958 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 8 transcripts (splice variants), 204 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000020345.8	PTPRB-201	8066	2211aa	ENSBTAP00000020345.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BFE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000115915.2	PTPRB-202	7802	2123aa	ENSBTAP00000094046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TBI8	-
ENSBTAT00000115288.1	PTPRB-208	7634	1986aa	ENSBTAP00000080479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S974	-
ENSBTAT00000116501.2	PTPRB-204	7567	1995aa	ENSBTAP00000077151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RXC7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000089699.1	PTPRB-203	7407	1908aa	ENSBTAP00000086260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SQG5	-
ENSBTAT00000093228.2	PTPRB-205	7297	1905aa	ENSBTAP00000089762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T282	-
ENSBTAT00000094928.2	PTPRB-206	7297	1905aa	ENSBTAP00000081047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SC05	-
ENSBTAT00000150273.1	PTPRB-207	7285	1901aa	ENSBTAP00000107584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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