Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC18B1 ENSBTAG00000015242

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Description

solute carrier family 18 member B1 [Source:VGNC Symbol;Acc:VGNC:34708]

Location

Primary_assembly 9: 70,927,238-70,965,960 reverse strand.

ARS-UCD2.0:CM008176.2

About this gene

This gene has 4 transcripts (splice variants), 213 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000020271.7	SLC18B1-204	2226	501aa	ENSBTAP00000020271.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BHT6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000085813.3	SLC18B1-201	2684	466aa	ENSBTAP00000057455.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MSH5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000150770.1	SLC18B1-203	2674	457aa	ENSBTAP00000106517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000102402.1	SLC18B1-202	2496	431aa	ENSBTAP00000079418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S7X8	-

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Summary

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