Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: CALR ENSBTAG00000015114

.

Description

calreticulin [Source:VGNC Symbol;Acc:VGNC:26715]

Location

Primary_assembly 7: 12,618,113-12,622,795 reverse strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 4 transcripts (splice variants), 198 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000020111.4	CALR-202	1914	417aa	ENSBTAP00000020111.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5D7J6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000107671.1	CALR-201	1896	392aa	ENSBTAP00000077182.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S1K1	-
ENSBTAT00000134527.1	CALR-203	1710	349aa	ENSBTAP00000088345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SSN4	-
ENSBTAT00000108145.1	CALR-204	1207	378aa	ENSBTAP00000089459.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SYV6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

.

Summary

.

.