Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: STN1 ENSBTAG00000015019

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Description

STN1 subunit of CST complex [Source:VGNC Symbol;Acc:VGNC:35408]

Location

Primary_assembly 26: 24,438,685-24,480,076 reverse strand.

ARS-UCD2.0:CM008193.2

About this gene

This gene has 9 transcripts (splice variants), 201 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000129347.1	STN1-206	2261	418aa	ENSBTAP00000088089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SVP4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000122775.1	STN1-207	2189	394aa	ENSBTAP00000095549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TA19	-
ENSBTAT00000097180.1	STN1-205	2169	402aa	ENSBTAP00000086902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SSD8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000089712.1	STN1-208	2156	385aa	ENSBTAP00000075422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RSC3	-
ENSBTAT00000019995.7	STN1-204	2088	371aa	ENSBTAP00000019995.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6Z0U8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000102623.1	STN1-203	1816	336aa	ENSBTAP00000098937.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TR63	-
ENSBTAT00000070266.2	STN1-209	1235	355aa	ENSBTAP00000059546.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6ZX96	-
ENSBTAT00000069219.2	STN1-201	1210	347aa	ENSBTAP00000063993.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LU16	-
ENSBTAT00000079260.2	STN1-202	1193	341aa	ENSBTAP00000057271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LQL4	-

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Summary

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