Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CALCOCO1 ENSBTAG00000015016

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Description

calcium binding and coiled-coil domain 1 [Source:VGNC Symbol;Acc:VGNC:26702]

Location

Primary_assembly 5: 26,328,379-26,342,523 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 6 transcripts (splice variants), 252 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000069806.3	CALCOCO1-205	3126	734aa	ENSBTAP00000074398.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MRI3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000145123.1	CALCOCO1-204	3994	634aa	ENSBTAP00000105698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000019992.6	CALCOCO1-201	3077	716aa	ENSBTAP00000019992.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N037	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000095957.2	CALCOCO1-206	3054	710aa	ENSBTAP00000082206.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SI38	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000101469.2	CALCOCO1-202	3030	692aa	ENSBTAP00000082755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SJH9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000123696.2	CALCOCO1-203	2775	607aa	ENSBTAP00000098379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TJ72	-

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Summary

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