Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: VCAN ENSBTAG00000014906

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Description

versican [Source:VGNC Symbol;Acc:VGNC:36778]

Location

Primary_assembly 7: 83,356,422-83,476,757 forward strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 5 transcripts (splice variants), 315 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000066841.2	VCAN-202	10291	3381aa	ENSBTAP00000067301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M9P9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000019848.6	VCAN-203	10261	3371aa	ENSBTAP00000019848.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MZ85	-
ENSBTAT00000042718.4	VCAN-204	7330	2394aa	ENSBTAP00000040349.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N6I5	-
ENSBTAT00000019852.7	VCAN-201	6512	1643aa	ENSBTAP00000019852.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MZ83	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000042717.5	VCAN-205	2116	656aa	ENSBTAP00000040348.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P81282-4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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