Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: IFFO1 ENSBTAG00000030369

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Description

intermediate filament family orphan 1 [Source:VGNC Symbol;Acc:VGNC:30042]

Location

Primary_assembly 5: 103,857,372-103,869,610 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 3 transcripts (splice variants), 267 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000019606.7	IFFO1-202	2697	571aa	ENSBTAP00000019606.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DLZ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000069083.3	IFFO1-201	2764	554aa	ENSBTAP00000070607.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NFW1	-
ENSBTAT00000094458.2	IFFO1-203	1958	315aa	ENSBTAP00000076448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZA1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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