Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SEC1 ENSBTAG00000014514

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Description

alpha-2-fucosyltransferase Sec1 [Source:NCBI gene (formerly Entrezgene);Acc:281483]

Location

Primary_assembly 18: 55,298,533-55,313,093 forward strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 4 transcripts (splice variants), 142 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000093967.1	SEC1-201	1894	420aa	ENSBTAP00000074990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RYY2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000019293.4	SEC1-203	2343	413aa	ENSBTAP00000019293.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N4T2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000086559.2	SEC1-204	2119	342aa	ENSBTAP00000061691.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0Z9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000113630.1	SEC1-202	1783	383aa	ENSBTAP00000084334.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SG35	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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