Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
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Gene: VPS50 ENSBTAG00000014255

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Description

VPS50 subunit of EARP/GARPII complex [Source:VGNC Symbol;Acc:VGNC:36826]

Location

Primary_assembly 4: 10,600,815-10,732,872 forward strand.

ARS-UCD2.0:CM008171.2

About this gene

This gene has 3 transcripts (splice variants) and 217 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000018952.7	VPS50-201	3690	990aa	ENSBTAP00000018952.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1ML08	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000081539.2	VPS50-203	3813	962aa	ENSBTAP00000073447.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MPN8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000077951.3	VPS50-202	3489	923aa	ENSBTAP00000069327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MFM4	-

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Summary

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