Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX13 ENSBTAG00000014074

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Description

sorting nexin 13 [Source:VGNC Symbol;Acc:VGNC:106940]

Location

Primary_assembly 4: 26,323,655-26,469,888 reverse strand.

ARS-UCD2.0:CM008171.2

About this gene

This gene has 3 transcripts (splice variants), 217 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000118357.1	SNX13-201	4725	1174aa	ENSBTAP00000087592.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SQF4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000079788.2	SNX13-202	4689	1162aa	ENSBTAP00000061108.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LUS6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000018702.7	SNX13-203	4494	1097aa	ENSBTAP00000018702.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNW3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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