Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
- Gene history

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Gene: CHMP6 ENSBTAG00000038745

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Description

charged multivesicular body protein 6 [Source:VGNC Symbol;Acc:VGNC:27305]

Location

Primary_assembly 19: 51,644,407-51,677,262 reverse strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 9 transcripts (splice variants) and 262 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000133541.1	CHMP6-205	1727	233aa	ENSBTAP00000102395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TUU3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000116455.1	CHMP6-207	1699	215aa	ENSBTAP00000097860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TND5	-
ENSBTAT00000096608.1	CHMP6-208	1624	190aa	ENSBTAP00000082483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SIW3	-
ENSBTAT00000018623.5	CHMP6-206	1612	186aa	ENSBTAP00000018623.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6R1M0	-
ENSBTAT00000097411.1	CHMP6-202	1335	187aa	ENSBTAP00000090799.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SZF0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000107847.1	CHMP6-209	1127	203aa	ENSBTAP00000078200.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S4M4	-
ENSBTAT00000121573.1	CHMP6-204	846	191aa	ENSBTAP00000077023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RX13	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000135526.1	CHMP6-203	709	228aa	ENSBTAP00000076575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZR3	-
ENSBTAT00000125156.1	CHMP6-201	702	186aa	ENSBTAP00000100770.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TQB2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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