Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: BCAT1 ENSBTAG00000013825

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Description

branched chain amino acid transaminase 1 [Source:VGNC Symbol;Acc:VGNC:26439]

Location

Primary_assembly 5: 85,057,007-85,179,197 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 7 transcripts (splice variants), 200 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000104984.2	BCAT1-205	7198	456aa	ENSBTAP00000091020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SX45	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000116404.2	BCAT1-206	7191	385aa	ENSBTAP00000083611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SIM4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000086973.3	BCAT1-207	7006	392aa	ENSBTAP00000071727.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1ML78	-
ENSBTAT00000018370.6	BCAT1-201	6925	386aa	ENSBTAP00000018370.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4IFQ7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000087140.3	BCAT1-204	6890	389aa	ENSBTAP00000071365.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LVA2 A0A3Q1NHD7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000141030.1	BCAT1-202	6814	349aa	ENSBTAP00000105270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RVJ0	-
ENSBTAT00000154049.1	BCAT1-203	6606	325aa	ENSBTAP00000105524.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TT43	-

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Summary

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