Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SYNPO ENSBTAG00000013744

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Description

synaptopodin [Source:VGNC Symbol;Acc:VGNC:35530]

Location

Primary_assembly 7: 61,990,291-62,028,912 forward strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 2 transcripts (splice variants), 184 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000018267.6	SYNPO-201	5664	1128aa	ENSBTAP00000018267.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BA93	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000133957.2	SYNPO-202	5291	885aa	ENSBTAP00000075220.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RS47	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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