Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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Phenotypes
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Gene: CMSS1 ENSBTAG00000013663

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Description

cms1 ribosomal small subunit homolog [Source:VGNC Symbol;Acc:VGNC:96694]

Location

Primary_assembly 1: 44,085,827-44,481,332 forward strand.

ARS-UCD2.0:CM008168.2

About this gene

This gene has 5 transcripts (splice variants) and 203 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000127819.2	CMSS1-203	1350	332aa	ENSBTAP00000082330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SAG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000134999.1	CMSS1-205	1357	291aa	ENSBTAP00000100788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TQC5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000018160.7	CMSS1-201	1297	279aa	ENSBTAP00000018160.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DIN7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000067402.2	CMSS1-204	1240	276aa	ENSBTAP00000061038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MYD1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000098603.1	CMSS1-202	1130	255aa	ENSBTAP00000086768.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SUG0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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