Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: KDM3A ENSBTAG00000013580

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Description

lysine demethylase 3A [Source:VGNC Symbol;Acc:VGNC:30525]

Location

Primary_assembly 11: 48,378,513-48,435,213 reverse strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 5 transcripts (splice variants), 127 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000135886.1	KDM3A-205	4978	1344aa	ENSBTAP00000088528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9ST48	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000080313.2	KDM3A-204	4823	1337aa	ENSBTAP00000067625.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MFC4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000018069.7	KDM3A-203	4796	1320aa	ENSBTAP00000018069.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BFC2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000093558.1	KDM3A-201	4461	1262aa	ENSBTAP00000103826.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TZR6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000112372.1	KDM3A-202	4437	1231aa	ENSBTAP00000088112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SP71	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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