Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
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Gene: RBM42 ENSBTAG00000013440

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Description

RNA binding motif protein 42 [Source:VGNC Symbol;Acc:VGNC:33801]

Location

Primary_assembly 18: 46,355,969-46,363,449 forward strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 5 transcripts (splice variants) and 104 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000086550.3	RBM42-203	1643	477aa	ENSBTAP00000063810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M222	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000017884.6	RBM42-205	1571	455aa	ENSBTAP00000017884.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N7X9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000135662.2	RBM42-202	1480	423aa	ENSBTAP00000085553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SNL9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000094982.2	RBM42-201	1232	383aa	ENSBTAP00000088243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SPM3	-
ENSBTAT00000110781.2	RBM42-204	761	181aa	ENSBTAP00000076164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RY47	-

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Summary

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