Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL1A1 ENSBTAG00000013103

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Description

collagen type I alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:27560]

Location

Primary_assembly 19: 36,457,718-36,475,634 forward strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 4 transcripts (splice variants), 186 orthologues, 37 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000017420.6	COL1A1-201	5899	1463aa	ENSBTAP00000017420.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P02453	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000103255.2	COL1A1-202	5800	1430aa	ENSBTAP00000095154.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TE21	-
ENSBTAT00000113783.2	COL1A1-203	5692	1394aa	ENSBTAP00000093981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T7S1	-
ENSBTAT00000129225.2	COL1A1-204	5647	1379aa	ENSBTAP00000103307.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TY75	-

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Summary

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