Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ITGA7 ENSBTAG00000012897

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Description

integrin subunit alpha 7 [Source:VGNC Symbol;Acc:VGNC:56212]

Location

Primary_assembly 5: 57,548,742-57,572,012 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 6 transcripts (splice variants), 218 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000119011.2	ITGA7-201	4262	1181aa	ENSBTAP00000098905.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TPF9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000133099.2	ITGA7-202	4130	1137aa	ENSBTAP00000075342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RS90	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000134133.2	ITGA7-205	4104	1141aa	ENSBTAP00000088898.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SZT9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000017145.6	ITGA7-206	4060	1144aa	ENSBTAP00000017145.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BGA0	-
ENSBTAT00000147233.1	ITGA7-203	4010	1097aa	ENSBTAP00000104493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000106790.2	ITGA7-204	3570	1122aa	ENSBTAP00000083564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SLM4	-

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Summary

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