Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX6 ENSBTAG00000012873

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Description

sorting nexin 6 [Source:VGNC Symbol;Acc:VGNC:35112]

Location

Primary_assembly 21: 44,998,870-45,096,344 reverse strand.

ARS-UCD2.0:CM008188.2

About this gene

This gene has 4 transcripts (splice variants), 211 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000122911.1	SNX6-202	2099	454aa	ENSBTAP00000101200.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TVM3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000118927.2	SNX6-201	2093	418aa	ENSBTAP00000093751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TA46	-
ENSBTAT00000017106.6	SNX6-203	2086	402aa	ENSBTAP00000017106.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MHJ5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000024786.5	SNX6-204	1865	244aa	ENSBTAP00000024786.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DM33	-

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Summary

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