Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PCDH1 ENSBTAG00000012518

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Description

protocadherin 1 [Source:VGNC Symbol;Acc:VGNC:32615]

Location

Primary_assembly 7: 52,934,572-52,958,313 reverse strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 5 transcripts (splice variants), 268 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000097401.1	PCDH1-201	4831	1237aa	ENSBTAP00000084280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SN71	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000103041.1	PCDH1-205	3910	1050aa	ENSBTAP00000091398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SY53	-
ENSBTAT00000083691.2	PCDH1-204	3827	1073aa	ENSBTAP00000062959.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M024	-
ENSBTAT00000016618.8	PCDH1-202	3474	1114aa	ENSBTAP00000016618.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6Q0C0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000126449.1	PCDH1-203	1278	382aa	ENSBTAP00000088862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SXR8	-

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Summary

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