Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RPGRIP1L ENSBTAG00000012499

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Description

RPGRIP1 like [Source:VGNC Symbol;Acc:VGNC:34105]

Location

Primary_assembly 18: 21,943,589-22,040,335 reverse strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 5 transcripts (splice variants), 203 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000079027.2	RPGRIP1L-202	4965	1254aa	ENSBTAP00000062284.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LYF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000104392.1	RPGRIP1L-203	4863	1220aa	ENSBTAP00000099540.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TSS2	-
ENSBTAT00000090118.1	RPGRIP1L-201	4707	1210aa	ENSBTAP00000081727.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SGV0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000083834.2	RPGRIP1L-204	3876	1235aa	ENSBTAP00000067557.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M2C5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000016585.7	RPGRIP1L-205	3874	1253aa	ENSBTAP00000016585.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BJB4	-

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Summary

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