Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PAX5 ENSBTAG00000012498

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Description

paired box 5 [Source:VGNC Symbol;Acc:VGNC:54466]

Location

Primary_assembly 8: 60,997,000-61,178,211 reverse strand.

ARS-UCD2.0:CM008175.2

About this gene

This gene has 9 transcripts (splice variants), 198 orthologues and 44 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000122049.1	PAX5-203	2526	392aa	ENSBTAP00000091204.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T0H7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000100367.1	PAX5-202	2748	391aa	ENSBTAP00000089736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T024	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000107786.1	PAX5-204	2424	358aa	ENSBTAP00000078784.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S1C4	-
ENSBTAT00000135902.1	PAX5-205	2397	349aa	ENSBTAP00000089758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9STK7	-
ENSBTAT00000105590.1	PAX5-201	2328	326aa	ENSBTAP00000099157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TL53	-
ENSBTAT00000101299.1	PAX5-206	2226	292aa	ENSBTAP00000082694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SG96	-
ENSBTAT00000016584.5	PAX5-208	1558	328aa	ENSBTAP00000016584.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MWQ4	-
ENSBTAT00000081940.2	PAX5-209	1438	363aa	ENSBTAP00000072830.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MM48	-
ENSBTAT00000127564.1	PAX5-207	1237	297aa	ENSBTAP00000076338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RVI8	-

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Summary

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