Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LDLR ENSBTAG00000012314

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Description

low density lipoprotein receptor [Source:VGNC Symbol;Acc:VGNC:55214]

Location

Primary_assembly 7: 15,545,320-15,579,077 forward strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 7 transcripts (splice variants), 129 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000016342.7	LDLR-201	4412	845aa	ENSBTAP00000016342.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P01131	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000148451.1	LDLR-202	4292	805aa	ENSBTAP00000104530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000078108.3	LDLR-203	4289	804aa	ENSBTAP00000072874.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NKK1	-
ENSBTAT00000082171.3	LDLR-204	4289	804aa	ENSBTAP00000070785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NG72	-
ENSBTAT00000086963.3	LDLR-205	4226	783aa	ENSBTAP00000062503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LYY5	-
ENSBTAT00000090868.2	LDLR-206	3902	675aa	ENSBTAP00000101961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TXM8	-
ENSBTAT00000125031.2	LDLR-207	3872	665aa	ENSBTAP00000082065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S9T8	-

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Summary

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