Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NR1D1 ENSBTAG00000012178

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Description

nuclear receptor subfamily 1 group D member 1 [Source:VGNC Symbol;Acc:VGNC:32228]

Location

Primary_assembly 19: 40,389,832-40,397,513 reverse strand.

ARS-UCD2.0:CM008186.2

About this gene

This gene has 6 transcripts (splice variants), 377 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000128232.1	NR1D1-203	2391	632aa	ENSBTAP00000099237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TQE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000133906.1	NR1D1-206	3263	575aa	ENSBTAP00000081746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SDT8	-
ENSBTAT00000016154.6	NR1D1-205	2669	613aa	ENSBTAP00000016154.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08E02	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000116194.1	NR1D1-204	2310	605aa	ENSBTAP00000101812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TTX2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000113702.1	NR1D1-201	2171	610aa	ENSBTAP00000076385.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZ21	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000077563.2	NR1D1-202	2126	610aa	ENSBTAP00000065454.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N5I5	-

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Summary

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