Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: GGTA1 ENSBTAG00000012090

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Description

glycoprotein alpha-galactosyltransferase 1 (inactive) [Source:NCBI gene (formerly Entrezgene);Acc:281780]

Location

Primary_assembly 11: 92,317,777-92,395,268 reverse strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 5 transcripts (splice variants), 96 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000077241.2	GGTA1-205	1940	495aa	ENSBTAP00000065603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LXS8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000016033.3	GGTA1-204	1830	368aa	ENSBTAP00000016033.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P14769	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000124589.1	GGTA1-201	1712	419aa	ENSBTAP00000078478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S3W0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000084155.2	GGTA1-202	1523	356aa	ENSBTAP00000074297.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF7AT15	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000135148.1	GGTA1-203	1484	343aa	ENSBTAP00000092916.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T516	-

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Summary

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