Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SLC38A5 ENSBTAG00000011854

.

Description

solute carrier family 38 member 5 [Source:VGNC Symbol;Acc:VGNC:34852]

Location

Primary_assembly X: 86,584,143-86,594,795 reverse strand.

ARS-UCD2.0:CM008197.2

About this gene

This gene has 3 transcripts (splice variants), 216 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000015740.5	SLC38A5-201	1807	479aa	ENSBTAP00000015740.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5E9S9-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000068739.2	SLC38A5-202	1773	474aa	ENSBTAP00000066448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M7S3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000122863.1	SLC38A5-203	1738	473aa	ENSBTAP00000075585.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RU46	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.