Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPRA ENSBTAG00000011425

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Description

protein tyrosine phosphatase receptor type A [Source:VGNC Symbol;Acc:VGNC:33544]

Location

Primary_assembly 13: 52,139,610-52,310,592 reverse strand.

ARS-UCD2.0:CM008180.2

About this gene

This gene has 5 transcripts (splice variants), 203 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000015189.8	PTPRA-205	3548	856aa	ENSBTAP00000015189.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BPA0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000073047.3	PTPRA-204	3419	804aa	ENSBTAP00000061119.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LUT5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000069951.2	PTPRA-202	3356	835aa	ENSBTAP00000071765.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MK12	-
ENSBTAT00000067747.2	PTPRA-201	3345	795aa	ENSBTAP00000058534.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LI10	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000100819.2	PTPRA-203	3107	752aa	ENSBTAP00000090873.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SZM3	-

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Summary

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