Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SPATA6L ENSBTAG00000011048

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Description

spermatosis associated 6 like [Source:VGNC Symbol;Acc:VGNC:35190]

Location

Primary_assembly 8: 39,858,476-39,915,201 forward strand.

ARS-UCD2.0:CM008175.2

About this gene

This gene has 6 transcripts (splice variants), 177 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000066299.3	SPATA6L-201	1511	426aa	ENSBTAP00000054175.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MXB1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000014671.5	SPATA6L-204	1537	409aa	ENSBTAP00000014671.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N2M9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000066817.2	SPATA6L-205	1495	395aa	ENSBTAP00000062894.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N1G9	-
ENSBTAT00000067115.2	SPATA6L-206	1321	337aa	ENSBTAP00000066317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M887	-
ENSBTAT00000074447.2	SPATA6L-202	1111	296aa	ENSBTAP00000057305.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LKQ4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000126587.1	SPATA6L-203	1026	291aa	ENSBTAP00000085862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SI05	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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