Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: RAPH1 ENSBTAG00000027201

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Description

Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 [Source:VGNC Symbol;Acc:VGNC:54621]

Location

Primary_assembly 2: 91,615,615-91,708,237 reverse strand.

ARS-UCD2.0:CM008169.2

About this gene

This gene has 4 transcripts (splice variants), 271 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000077642.2	RAPH1-202	4924	1289aa	ENSBTAP00000062502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M2Z8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000014638.7	RAPH1-203	4843	1262aa	ENSBTAP00000014638.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BPM7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000100207.1	RAPH1-204	2690	617aa	ENSBTAP00000089973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T0R3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000086599.2	RAPH1-201	1838	595aa	ENSBTAP00000061495.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LND5	-

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Summary

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