Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CCDC136 ENSBTAG00000011002

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Description

coiled-coil domain containing 136 [Source:VGNC Symbol;Acc:VGNC:26848]

Location

Primary_assembly 4: 92,763,325-92,791,519 forward strand.

ARS-UCD2.0:CM008171.2

About this gene

This gene has 5 transcripts (splice variants), 235 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000101460.1	CCDC136-201	3986	1222aa	ENSBTAP00000077412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RXV9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000102843.2	CCDC136-202	4620	1174aa	ENSBTAP00000075637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RU76	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000014612.8	CCDC136-205	3926	1204aa	ENSBTAP00000014612.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N343	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000124001.2	CCDC136-203	1795	566aa	ENSBTAP00000085982.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SPQ9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000070769.3	CCDC136-204	1768	447aa	ENSBTAP00000066405.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N733	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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