Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP39 ENSBTAG00000010691

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Description

ubiquitin specific peptidase 39 [Source:VGNC Symbol;Acc:VGNC:36728]

Location

Primary_assembly 11: 49,357,795-49,394,328 reverse strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 4 transcripts (splice variants), 207 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000014148.6	USP39-201	2141	565aa	ENSBTAP00000014148.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6QQX8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000117409.1	USP39-204	1636	526aa	ENSBTAP00000085459.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SR65	-
ENSBTAT00000075371.2	USP39-202	1621	536aa	ENSBTAP00000059343.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LVK4	-
ENSBTAT00000120094.1	USP39-203	1477	488aa	ENSBTAP00000095335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TET3	-

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Summary

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