Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CUX1 ENSBTAG00000010659

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Description

cut like homeobox 1 [Source:VGNC Symbol;Acc:VGNC:27839]

Location

Primary_assembly 25: 34,703,184-35,062,601 reverse strand.

ARS-UCD2.0:CM008192.2

About this gene

This gene has 7 transcripts (splice variants), 221 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000014098.7	CUX1-207	5805	1534aa	ENSBTAP00000014098.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N693	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000117327.1	CUX1-201	3129	766aa	ENSBTAP00000085397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SJ86	-
ENSBTAT00000071467.2	CUX1-203	3098	677aa	ENSBTAP00000066571.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M822	-
ENSBTAT00000097324.1	CUX1-204	3050	661aa	ENSBTAP00000095014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TE15	-
ENSBTAT00000149069.1	CUX1-206	3032	675aa	ENSBTAP00000107422.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000109071.1	CUX1-205	2960	631aa	ENSBTAP00000083717.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SE89	-
ENSBTAT00000087199.2	CUX1-202	2722	638aa	ENSBTAP00000060651.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LLJ6	-

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Summary

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