Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SMC1B ENSBTAG00000024132

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Description

structural maintenance of chromosomes 1B [Source:VGNC Symbol;Acc:VGNC:34998]

Location

Primary_assembly 5: 115,735,732-115,818,182 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 6 transcripts (splice variants), 205 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000110144.1	SMC1B-201	4422	1235aa	ENSBTAP00000103751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U157	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000114885.1	SMC1B-202	4218	1167aa	ENSBTAP00000076880.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RZU3	-
ENSBTAT00000127018.1	SMC1B-203	4200	1161aa	ENSBTAP00000087457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9STJ3	-
ENSBTAT00000014005.6	SMC1B-204	4093	1198aa	ENSBTAP00000014005.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N6C8	-
ENSBTAT00000140773.1	SMC1B-206	3988	1173aa	ENSBTAP00000106303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000123099.1	SMC1B-205	3948	1152aa	ENSBTAP00000083027.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SH55	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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