Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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Gene: NPAT ENSBTAG00000010286

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Description

nuclear protein, coactivator of histone transcription [Source:VGNC Symbol;Acc:VGNC:50617]

Location

Primary_assembly 15: 17,789,813-17,842,981 reverse strand.

ARS-UCD2.0:CM008182.2

About this gene

This gene has 3 transcripts (splice variants) and 202 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000013589.6	NPAT-203	5569	1433aa	ENSBTAP00000013589.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MHZ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000135043.1	NPAT-202	5407	1395aa	ENSBTAP00000082674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SFM4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000130150.1	NPAT-201	5340	1352aa	ENSBTAP00000090539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SYU1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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