Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATP2B1 ENSBTAG00000009552

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Description

ATPase plasma membrane Ca2+ transporting 1 [Source:VGNC Symbol;Acc:VGNC:26293]

Location

Primary_assembly 5: 19,476,824-19,606,641 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 4 transcripts (splice variants), 197 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000077323.2	ATP2B1-204	4211	1249aa	ENSBTAP00000069453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1ND98	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000012570.5	ATP2B1-202	4417	1220aa	ENSBTAP00000012570.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N7J2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000080252.2	ATP2B1-203	4309	1184aa	ENSBTAP00000072195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MDH1	-
ENSBTAT00000085669.2	ATP2B1-201	3843	1178aa	ENSBTAP00000073946.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MU03	-

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Summary

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